From 3b9a4d0bbb01a4835d1b8490f74f5444912ec460 Mon Sep 17 00:00:00 2001 From: Dmitry Kokorin Date: Mon, 5 Jul 2021 19:03:17 +0300 Subject: [PATCH] Python: rna_transcription --- .../rna-transcription/.exercism/metadata.json | 1 + python/rna-transcription/README.md | 66 +++++++++++++++++++ python/rna-transcription/rna_transcription.py | 4 ++ .../rna_transcription_test.py | 29 ++++++++ 4 files changed, 100 insertions(+) create mode 100644 python/rna-transcription/.exercism/metadata.json create mode 100644 python/rna-transcription/README.md create mode 100644 python/rna-transcription/rna_transcription.py create mode 100644 python/rna-transcription/rna_transcription_test.py diff --git a/python/rna-transcription/.exercism/metadata.json b/python/rna-transcription/.exercism/metadata.json new file mode 100644 index 0000000..ff93350 --- /dev/null +++ b/python/rna-transcription/.exercism/metadata.json @@ -0,0 +1 @@ +{"track":"python","exercise":"rna-transcription","id":"b0be7e59055d472db63a2042ca124206","url":"https://exercism.io/my/solutions/b0be7e59055d472db63a2042ca124206","handle":"DmitryKokorin","is_requester":true,"auto_approve":false} \ No newline at end of file diff --git a/python/rna-transcription/README.md b/python/rna-transcription/README.md new file mode 100644 index 0000000..a067c7c --- /dev/null +++ b/python/rna-transcription/README.md @@ -0,0 +1,66 @@ +# RNA Transcription + +Given a DNA strand, return its RNA complement (per RNA transcription). + +Both DNA and RNA strands are a sequence of nucleotides. + +The four nucleotides found in DNA are adenine (**A**), cytosine (**C**), +guanine (**G**) and thymine (**T**). + +The four nucleotides found in RNA are adenine (**A**), cytosine (**C**), +guanine (**G**) and uracil (**U**). + +Given a DNA strand, its transcribed RNA strand is formed by replacing +each nucleotide with its complement: + +* `G` -> `C` +* `C` -> `G` +* `T` -> `A` +* `A` -> `U` + + +## Exception messages + +Sometimes it is necessary to raise an exception. When you do this, you should include a meaningful error message to +indicate what the source of the error is. This makes your code more readable and helps significantly with debugging. Not +every exercise will require you to raise an exception, but for those that do, the tests will only pass if you include +a message. + +To raise a message with an exception, just write it as an argument to the exception type. For example, instead of +`raise Exception`, you should write: + +```python +raise Exception("Meaningful message indicating the source of the error") +``` + +## Running the tests + +To run the tests, run `pytest rna_transcription_test.py` + +Alternatively, you can tell Python to run the pytest module: +`python -m pytest rna_transcription_test.py` + +### Common `pytest` options + +- `-v` : enable verbose output +- `-x` : stop running tests on first failure +- `--ff` : run failures from previous test before running other test cases + +For other options, see `python -m pytest -h` + +## Submitting Exercises + +Note that, when trying to submit an exercise, make sure the solution is in the `$EXERCISM_WORKSPACE/python/rna-transcription` directory. + +You can find your Exercism workspace by running `exercism debug` and looking for the line that starts with `Workspace`. + +For more detailed information about running tests, code style and linting, +please see [Running the Tests](http://exercism.io/tracks/python/tests). + +## Source + +Hyperphysics [http://hyperphysics.phy-astr.gsu.edu/hbase/Organic/transcription.html](http://hyperphysics.phy-astr.gsu.edu/hbase/Organic/transcription.html) + +## Submitting Incomplete Solutions + +It's possible to submit an incomplete solution so you can see how others have completed the exercise. diff --git a/python/rna-transcription/rna_transcription.py b/python/rna-transcription/rna_transcription.py new file mode 100644 index 0000000..9d7bcf2 --- /dev/null +++ b/python/rna-transcription/rna_transcription.py @@ -0,0 +1,4 @@ +RNA_TRANSLATION = ''.maketrans('GCTA', 'CGAU') + +def to_rna(dna_strand): + return dna_strand.translate(RNA_TRANSLATION) diff --git a/python/rna-transcription/rna_transcription_test.py b/python/rna-transcription/rna_transcription_test.py new file mode 100644 index 0000000..1d7193a --- /dev/null +++ b/python/rna-transcription/rna_transcription_test.py @@ -0,0 +1,29 @@ +import unittest + +from rna_transcription import to_rna + +# Tests adapted from `problem-specifications//canonical-data.json` + + +class RnaTranscriptionTest(unittest.TestCase): + def test_empty_rna_sequence(self): + self.assertEqual(to_rna(""), "") + + def test_rna_complement_of_cytosine_is_guanine(self): + self.assertEqual(to_rna("C"), "G") + + def test_rna_complement_of_guanine_is_cytosine(self): + self.assertEqual(to_rna("G"), "C") + + def test_rna_complement_of_thymine_is_adenine(self): + self.assertEqual(to_rna("T"), "A") + + def test_rna_complement_of_adenine_is_uracil(self): + self.assertEqual(to_rna("A"), "U") + + def test_rna_complement(self): + self.assertEqual(to_rna("ACGTGGTCTTAA"), "UGCACCAGAAUU") + + +if __name__ == "__main__": + unittest.main()